Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z _ _createAllTreeArrays() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) A acceptable_region() (toor.Corrections.PET.DOI.intersection_test.PlanesCalc method) acceptableYDistance (toor.Optimizer.GaussianFileGenarator.GaussianParameters property) acceptableZDistance (toor.Optimizer.GaussianFileGenarator.GaussianParameters property) AcquisitionContext (class in toor.ImageReader.DICOM.image) AcquisitionInfo (class in toor.TORFilesReader.scanning_header) acquisitionInfo (toor.TORFilesReader.torfiles.ToRFile property) active_crystal_vertices() (toor.Corrections.PET.DOI.intersection_test.PlotIntersectionData method) activity_on_subject_at_injection_time() (toor.Corrections.PET.DecayCorrection.decaycorrection.DecayCorrection method) activity_on_subject_at_scanning_time() (toor.Corrections.PET.DecayCorrection.decaycorrection.DecayCorrection method) AdaptativeDOIMapping (class in toor.Corrections.PET.DOI.doi) addDevice() (toor.Designer.deviceDesigner.DeviceDesignerStandalone method) addModule() (toor.Designer.deviceDesigner.DeviceDesignerStandalone method) AddMotorInfoToRoot (class in toor.GateLink.RootToTor.addanglestorootfile) addObservers() (toor.Designer.Image_vtk_projector_article.SliceViewer method) addViewportsNema() (toor.Designer.Image_vtk_projector_article.SliceViewer method) addVolumeRendering() (toor.Designer.Image_vtk_projector_article.SliceViewer method) addxRayProducerSource() (toor.Designer.deviceDesigner.DeviceDesignerStandalone method) allDecayGammas (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) alphaRotation (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) amplifyPointsToGPUCoordinateSystem() (toor.Corrections.CT.Projector.pyramidalprojector.PyramidalProjector method) (toor.Corrections.General.generalprojector.GeneralProjector method) AnalyticalReconstruction (class in toor.AnalyticalReconstruction.initializer) AnimalType (class in toor.TORFilesReader.subject_type) apply_circular_mask_fov() (toor.Optimizer.GPUManager.EM method) apply_decay() (toor.Corrections.PET.DecayCorrection.decaycorrection.DecayCorrection static method) apply_quantification_factor_to_image() (toor.Quantification.factor_calibration_phantom_uniform.FactorQuantificationFromUniformPhantom method) applyModelProperties() (toor.DetectionLayout.Photodetectors.SiPM.Hamamatsu.HamamatsuS14161Series method) AutomaticNormalization (class in toor.Corrections.CT.normalization) average_activity() (toor.Corrections.PET.DecayCorrection.decaycorrection.DecayCorrection static method) axialMotorStep (toor.Corrections.CT.normalization.DualRotationNormalizationSystem property) B baseID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) baseID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) betaRotation (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) blockSPiMArea (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) blockSPiMDepth (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) blockSPiMHeight (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) blockSPiMWidth (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) borderSizeX (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) borderSizeY (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) C calcD() (toor.Corrections.CT.Projector.pyramidalprojector.PyramidalProjector static method) calculate_delta_t() (toor.Corrections.PET.DecayCorrection.decaycorrection.DecayCorrection static method) calculate_s_phi() (toor.AnalyticalReconstruction.sinogram.Sinogram method) calculateAllPositionsAllDetectors (toor.Corrections.CT.normalization.DualRotationNormalizationSystem property) calculateFocalPoint() (toor.DetectionLayout.Collimators.collimatorGeneric.CollimatorGeneric method) calculateInitialGeometry() (toor.DetectionLayout.Modules.SPECTModuleGeneric.SPECTHeadGeneric method) (toor.Geometry.Standard.cylindrical.CylindricalGeometry method) (toor.Geometry.Standard.polygonal.RegularPolygonalGeometry method) calculateInitialMatrix() (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule method) calculateInitialPyramidalVertex() (toor.DetectionLayout.Collimators.collimatorGeneric.CollimatorGeneric method) calculateMichelogram() (toor.AnalyticalReconstruction.sinogram.Sinogram method) calculateNormalizedVectors() (toor.Corrections.PET.Projector.planeequations.ParallelepipedProjector method) calculateVectors() (toor.Corrections.PET.Projector.planeequations.ParallelepipedProjector method) calculateVolume() (toor.Corrections.PET.Projector.planeequations.ParallelepipedProjector method) calculation_radiotracer_factors() (toor.Quantification.factor_calibration_phantom_uniform.FactorQuantificationFromUniformPhantom method) calcuteVectorsImagePlane() (toor.Corrections.PET.Projector.planeequations.ParallelepipedProjector method) calcVector() (toor.Corrections.CT.Projector.pyramidalprojector.PyramidalProjector static method) calibrations (toor.TORFilesReader.torfiles.ToRFile property) CalibrationWrapper (class in toor.CalibrationWrapper.calibration_wrapper) centerSiPMModule (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) central_crystal_planes() (toor.Corrections.PET.DOI.intersection_test.PlanesCalc method) centroid (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) channelCentrePosition (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) chooseJustFilteredData() (toor.GateLink.RootToTor.rootjoiner.RootJoiner method) codeMeaning() (toor.ImageReader.DICOM.submodule.SubAttribute method) codeValue() (toor.ImageReader.DICOM.submodule.SubAttribute method) codingSchemeDesignator() (toor.ImageReader.DICOM.submodule.SubAttribute method) codingSchemeVersion() (toor.ImageReader.DICOM.submodule.SubAttribute method) CoincidenceValidationPlots (class in toor.GateLink.RootToTor.validation_plots) CollimatorGeneric (class in toor.DetectionLayout.Collimators.collimatorGeneric) collimators (toor.DetectionLayout.Modules.SPECTModuleGeneric.SPECTHeadGeneric property) CommonInstanceReference (class in toor.ImageReader.DICOM.image) comptonCrystal (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) comptonCrystal() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) comptonDetector() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) comptonPhantom (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) comptonPhantom() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) comptonWorld() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) countsPerGlobalID (toor.TORFilesReader.scanning_body.ListModeBody property) countsPerPosition (toor.Corrections.CT.Projector.pyramidalprojector.PyramidalProjector property) create_reslice() (toor.Designer.Image_vtk_projector_article.SliceViewer method) create_viewport() (toor.Designer.Image_vtk_projector_article.SliceViewer method) createDeviceInDirectory() (toor.Device.storedeviceInfo.StoreDeviceInFo method) createDirectory() (toor.Device.device.Device method) createMotorArrays() (toor.GateLink.RootToTor.addanglestorootfile.AddMotorInfoToRoot method) createMovie() (toor.Designer.Image_vtk_projector_article.SliceViewer method) createPlanes() (toor.Corrections.CT.Projector.pyramidalprojector.PyramidalProjector method) createVectorialSpace() (toor.Corrections.CT.Projector.pyramidalprojector.PyramidalProjector method) (toor.Corrections.General.generalprojector.GeneralProjector method) crossProduct() (toor.Corrections.CT.Projector.pyramidalprojector.PyramidalProjector static method) crystal_planes() (toor.Corrections.PET.DOI.intersection_test.PlanesCalc method) crystalID (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) CrystalPlanes (class in toor.Corrections.PET.DOI.crystal_planes) crystals_central_planes() (toor.Corrections.PET.DOI.crystal_planes.CrystalPlanes method) crystalSizeX (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) crystalSizeY (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) crystalSizeZ (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) currentBranchID (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) currentHighCutEnergy (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) currentLowCutEnergy (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) currentNumberOfBranches (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) currentNumberOfGammas (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) currentPeakEnergy (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) currentPeakID (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) currentPeakName (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) currentProcess (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) currentRadioisotopeFather (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) currentRadioIsotopeHalfLife (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) currentRadioisotopeSon (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) currentRadioisotopeState (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) currentRatioBranch (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) cut_current_frame() (toor.Corrections.PET.Projector.planeequations.ParallelepipedProjector method) CylindricalGeometry (class in toor.Geometry.Standard.cylindrical) CZTModule (class in toor.DetectionLayout.Semicondutors.cztgeometry) CZTModules (toor.DetectionLayout.Modules.SPECTModuleGeneric.SPECTHeadGeneric property) cztThickness (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule property) D dataDescription (toor.ImageReader.Interfile.general_data.GeneralData property) date (toor.TORFilesReader.scanning_header.AcquisitionInfo property) DecayCorrection (class in toor.Corrections.PET.DecayCorrection.decaycorrection) decayEnergies (toor.TORFilesReader.Radioisotope.RadioisotopeInfo property) decayFactor (toor.TORFilesReader.Radioisotope.RadioisotopeInfo property) decayPercentage (toor.TORFilesReader.Radioisotope.RadioisotopeInfo property) decayTypes (toor.TORFilesReader.Radioisotope.RadioisotopeInfo property) default_values() (toor.ImageReader.DICOM.writeDicom.WriteDicom method) density (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) dependencies() (toor.ImageReader.DICOM.submodule.MainAttribute method) (toor.ImageReader.DICOM.submodule.SubAttribute method) derenzo() (toor.Designer.Image_vtk_projector_article.SliceViewer method) design_active_crystal() (toor.Corrections.PET.DOI.intersection_test.PlotIntersectionData method) design_intersection_points() (toor.Corrections.PET.DOI.intersection_test.PlotIntersectionData method) design_non_active_crystals() (toor.Corrections.PET.DOI.intersection_test.PlotIntersectionData method) design_planes_coincidence() (toor.Corrections.PET.DOI.intersection_test.PlotIntersectionData method) detectEnergyWindows() (toor.Corrections.General.EnergyFiltering.EnergyFiltering method) DetectorArrayGeometryTest (class in toor.Corrections.PET.DOI.intersection_test) detectorModule (toor.Geometry.Standard.cylindrical.CylindricalGeometry property) (toor.Geometry.Standard.polygonal.RegularPolygonalGeometry property) DetectorSensitivityResponse (class in toor.Corrections.General.detector_sensitivity) detectorSizeX (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule property) detectorSizeY (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule property) detectorsPosition (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) determinant() (toor.Corrections.PET.DOI.intersection_test.PlanesCalc static method) Device (class in toor.Device.device) (class in toor.ImageReader.DICOM.image) DeviceDesignerStandalone (class in toor.Designer.deviceDesigner) deviceDirectory (toor.Device.device.Device property) deviceName (toor.Device.device.Device property) deviceType (toor.Device.device.Device property) deviceUUID (toor.Device.device.Device property) diagnosis (toor.TORFilesReader.subject_type.AnimalType property) dicomHeaders (toor.ImageReader.DICOM.filesreader.DicomReader property) DicomReader (class in toor.ImageReader.DICOM.filesreader) DicomVTKReader (class in toor.ImageReader.DICOM.filesreader) Dict2Class (class in toor.ImageReader.DICOM.writeDicom) digitalPhantomCopy (toor.TORFilesReader.subject_type.PhantomType property) distance_between_points() (toor.Corrections.PET.DOI.intersection_test.PlanesCalc static method) dotA_B() (toor.Geometry.LinearPET.linear_parametric_points.SetParametricCoordinates method) doubleScannerFormat (toor.GateLink.RootToTor.readroot.ReadRootFile property) DualRotationNormalizationSystem (class in toor.Corrections.CT.normalization) E effectiveAreaPerChannel (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) effectiveHeight (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) effectiveWidth (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) EM (class in toor.Optimizer.GPUManager) endDateTime (toor.TORFilesReader.Radioisotope.RadioisotopeInfo property) energy (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) energy() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) EnergyFiltering (class in toor.Corrections.General.EnergyFiltering) energyPeakKey (toor.Corrections.CT.normalization.DualRotationNormalizationSystem property) energyPeaks (toor.Corrections.General.detector_sensitivity.DetectorSensitivityResponse property) EnergyResolutionFunction (class in toor.Device.energy_resolution_function) energyResolutionFunction (toor.Device.device.Device property) energyWindows (toor.Corrections.General.detector_sensitivity.DetectorSensitivityResponse property) Equipment (class in toor.ImageReader.DICOM.equipment) eventID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) eventID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) execute() (toor.Designer.Image_vtk_projector_article.vtkTimerCallback method) externalBorderSizeX (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) externalBorderSizeY (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) ExtractSingles (class in toor.GateLink.RootToTor.singlesstruct) F FactorQuantificationFromUniformPhantom (class in toor.Quantification.factor_calibration_phantom_uniform) fanMotorStep (toor.Corrections.CT.normalization.DualRotationNormalizationSystem property) FBP2D() (toor.AnalyticalReconstruction.initializer.AnalyticalReconstruction method) fields (toor.Corrections.General.detector_sensitivity.DetectorSensitivityResponse property) fieldsListMode (toor.Corrections.CT.normalization.DualRotationNormalizationSystem property) fileBodyData (toor.TORFilesReader.torfiles.ToRFile property) findCoincidences() (toor.GateLink.RootToTor.findcoincidencesRoot2Numpy.GenerateCoincidencesAndAnhnilationsPositions method) findCoincidencesBigArrays() (toor.GateLink.RootToTor.findcoincidencesRoot2Numpy.GenerateCoincidencesAndAnhnilationsPositions method) findCoincidencesTrueEventID() (toor.GateLink.RootToTor.findcoincidencesRoot2Numpy.GenerateCoincidencesAndAnhnilationsPositions method) fix_sop_class() (in module toor.ImageReader.DICOM.filesreader) focalPoint (toor.DetectionLayout.Collimators.collimatorGeneric.CollimatorGeneric property) focalSpotDiameter (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource property) focalSpotInitialPositionWKSystem (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource property) focalSpotInitialPositionXYSystem (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource property) FrameOfReference (class in toor.ImageReader.DICOM.frameofreference) frameOfReferenceUID (toor.TORFilesReader.scanning_header.AcquisitionInfo property) frameStartIndexes (toor.TORFilesReader.scanning_body.ListModeBody property) front2Front() (toor.AnalyticalReconstruction.sinogram.Sinogram method) G GATEMacParser (class in toor.GateLink.GateToTor.MacParser) gaussian_y_fix_term (toor.Optimizer.GaussianFileGenarator.GaussianParameters property) gaussian_z_fix_term (toor.Optimizer.GaussianFileGenarator.GaussianParameters property) GaussianParameters (class in toor.Optimizer.GaussianFileGenarator) GeneralData (class in toor.ImageReader.Interfile.general_data) GeneralImage (class in toor.ImageReader.DICOM.image) GeneralProjector (class in toor.Corrections.General.generalprojector) GeneralReference (class in toor.ImageReader.DICOM.image) GeneralSeries (class in toor.ImageReader.DICOM.series) GeneralStudy (class in toor.ImageReader.DICOM.study) generate_listmode_doi_values() (toor.Corrections.PET.DOI.doi.AdaptativeDOIMapping method) generate_roi_listmode_data() (toor.Optimizer.selectable_events.ROIEvents method) generateCharts() (toor.GateLink.RootToTor.validation_plots.CoincidenceValidationPlots method) GenerateCoincidencesAndAnhnilationsPositions (class in toor.GateLink.RootToTor.findcoincidencesRoot2Numpy) generateDeviceUUID() (toor.Device.device.Device method) generateMotorPositions (toor.Corrections.CT.normalization.DualRotationNormalizationSystem property) generateStatistics() (toor.TORFilesReader.scanning_body.ListModeBody method) GenericCrystal (class in toor.DetectionLayout.Photodetectors.Crystals.genericCrystal) GenericRadiativeSource (class in toor.DetectionLayout.RadiationProducer.GenericSource) GenericSiPM (class in toor.DetectionLayout.Photodetectors.SiPM.generic) geometricalFillFactor (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) GeometryDesigner (class in toor.Designer.geometricdesigner) geometryObject (toor.Device.device.Device property) geometryType (toor.Device.device.Device property) get_active_roi_voxels() (toor.Optimizer.GPUManager.EM method) get_fields() (toor.GateLink.GateToTor.MacParser.GATEMacParser method) getCrystalShape() (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal method) getDeviceName() (toor.Device.device.Device method) getFWHMSystemEnergyResponse() (toor.Device.device.Device method) getHeight() (toor.Geometry.Standard.cylindrical.CylindricalGeometry method) getRadius() (toor.Geometry.Standard.cylindrical.CylindricalGeometry method) globalArray (toor.GateLink.RootToTor.rootjoiner.RootJoiner property) globalArray_scanner1 (toor.GateLink.RootToTor.rootjoiner.RootJoiner property) globalArray_scanner2 (toor.GateLink.RootToTor.rootjoiner.RootJoiner property) globalDetectorID (toor.TORFilesReader.scanning_body.ListModeBody property) globalPosX (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) globalPosX() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) globalPosY (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) globalPosY() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) globalPosZ (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) globalPosZ() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) GPUSharedMemoryMultipleKernel (class in toor.Optimizer.gpu_multiple_kernel) (class in toor.Optimizer.kernelManager) GPUSharedMemorySingleKernel (class in toor.Optimizer.gpu_shared_memory) H halfLifes (toor.TORFilesReader.Radioisotope.RadioisotopeInfo property) HamamatsuS13360Series (class in toor.DetectionLayout.Photodetectors.SiPM.Hamamatsu) HamamatsuS14161Series (class in toor.DetectionLayout.Photodetectors.SiPM.Hamamatsu) header (toor.ImageReader.Interfile.interfile_writer.InterfileWriter property) healthy (toor.TORFilesReader.subject_type.AnimalType property) highEnergyLightDetectorBlock (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) I id (toor.TORFilesReader.scanning_header.AcquisitionInfo property) ImagePixel (class in toor.ImageReader.DICOM.image) ImagePlane (class in toor.ImageReader.DICOM.image) imagingModality (toor.ImageReader.Interfile.general_data.GeneralData property) indexCountsPerGlobalID (toor.TORFilesReader.scanning_body.ListModeBody property) indexesOfFrames (toor.TORFilesReader.scanning_header.AcquisitionInfo property) initial_activity_at_injection_time() (toor.Corrections.PET.DecayCorrection.decaycorrection.DecayCorrection method) initialMatrix (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule property) instanceUID (toor.TORFilesReader.scanning_header.AcquisitionInfo property) InterfileWriter (class in toor.ImageReader.Interfile.interfile_writer) invert2timesigma_y_square (toor.Optimizer.GaussianFileGenarator.GaussianParameters property) invert2timesigma_z_square (toor.Optimizer.GaussianFileGenarator.GaussianParameters property) issuerOfPatientID() (toor.ImageReader.DICOM.patient.Patient_not method) IterativeAlgorithmCPU (class in toor.Optimizer.CPU) J join() (toor.GateLink.RootToTor.rootjoiner.RootJoiner method) joinPyramidPointsIntoArray() (toor.DetectionLayout.Collimators.collimatorGeneric.CollimatorGeneric method) K KleinNishina (class in toor.Corrections.PET.EnergyCorrection.KleinNishina) L level1ID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) level1ID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) level2ID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) level2ID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) level3ID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) level3ID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) level4ID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) level4ID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) level5ID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) level5ID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) list_mode_decay_correction() (toor.Corrections.PET.DecayCorrection.decaycorrection.DecayCorrection method) listmode (toor.TORFilesReader.scanning_body.ListModeBody property) ListModeBody (class in toor.TORFilesReader.scanning_body) listmodeFields (toor.TORFilesReader.scanning_body.ListModeBody property) listModeForNormalization (toor.Corrections.CT.normalization.DualRotationNormalizationSystem property) load_doi_files() (toor.Corrections.PET.DOI.doi.AdaptativeDOIMapping method) load_info() (toor.Quantification.factor_calibration_phantom_uniform.FactorQuantificationFromUniformPhantom method) load_initial_arrays() (toor.Optimizer.GPUManager.EM method) load_roi_map() (toor.Optimizer.GPUManager.EM method) longCodeValue() (toor.ImageReader.DICOM.submodule.SubAttribute method) LYSOCrystal (class in toor.DetectionLayout.Photodetectors.Crystals.LYSO) M MainAttribute (class in toor.ImageReader.DICOM.submodule) mainEmissions (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource property) map_events_gpu() (toor.Optimizer.gpu_multiple_kernel.GPUSharedMemoryMultipleKernel method) (toor.Optimizer.kernelManager.GPUSharedMemoryMultipleKernel method) mass (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) matrix_without_reduction() (toor.Corrections.CT.normalization.NormalizationCT method) max (toor.TORFilesReader.scanning_body.ListModeBody property) maxValueForVolume() (toor.Designer.Image_vtk_projector_article.SliceViewer method) mean (toor.TORFilesReader.scanning_body.ListModeBody property) median (toor.TORFilesReader.scanning_body.ListModeBody property) MiceNaf() (toor.Designer.Image_vtk_projector_article.SliceViewer method) michelogram (toor.AnalyticalReconstruction.sinogram.Sinogram property) michelogramRegularization() (toor.AnalyticalReconstruction.initializer.AnalyticalReconstruction method) min (toor.TORFilesReader.scanning_body.ListModeBody property) min_max_position_of_the_event_in_image() (toor.Corrections.PET.Projector.planeequations.ParallelepipedProjector method) minDiff (toor.TORFilesReader.scanning_body.ListModeBody property) minValueForVolume() (toor.Designer.Image_vtk_projector_article.SliceViewer method) model (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) modelHighEnergyLightDetectors (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule attribute) (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) modelVisibleLightSensors (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule attribute) (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) module toor toor.AnalyticalReconstruction toor.AnalyticalReconstruction.initializer toor.AnalyticalReconstruction.sinogram toor.CalibrationWrapper toor.CalibrationWrapper.calibration_wrapper toor.Corrections toor.Corrections.CT toor.Corrections.CT.normalization toor.Corrections.CT.Projector toor.Corrections.CT.Projector.pyramidalprojector toor.Corrections.General toor.Corrections.General.detector_sensitivity toor.Corrections.General.EnergyFiltering toor.Corrections.General.generalprojector toor.Corrections.PET toor.Corrections.PET.Attenuation toor.Corrections.PET.DecayCorrection toor.Corrections.PET.DecayCorrection.decaycorrection toor.Corrections.PET.DOI toor.Corrections.PET.DOI.crystal_planes toor.Corrections.PET.DOI.doi toor.Corrections.PET.DOI.intersection_test toor.Corrections.PET.DOI.solid_angle toor.Corrections.PET.EnergyCorrection toor.Corrections.PET.EnergyCorrection.KleinNishina toor.Corrections.PET.Projector toor.Corrections.PET.Projector.planeequations toor.Designer toor.Designer.deviceDesigner toor.Designer.geometricdesigner toor.Designer.Image_vtk_projector_article toor.DetectionLayout toor.DetectionLayout.Collimators toor.DetectionLayout.Collimators.collimatorGeneric toor.DetectionLayout.Modules toor.DetectionLayout.Modules.PETModuleGeneric toor.DetectionLayout.Modules.SPECTModuleGeneric toor.DetectionLayout.Photodetectors toor.DetectionLayout.Photodetectors.Crystals toor.DetectionLayout.Photodetectors.Crystals.genericCrystal toor.DetectionLayout.Photodetectors.Crystals.LYSO toor.DetectionLayout.Photodetectors.SiPM toor.DetectionLayout.Photodetectors.SiPM.generic toor.DetectionLayout.Photodetectors.SiPM.Hamamatsu toor.DetectionLayout.Photodetectors.SiPM.Kettek toor.DetectionLayout.RadiationProducer toor.DetectionLayout.RadiationProducer.GenericSource toor.DetectionLayout.Semicondutors toor.DetectionLayout.Semicondutors.cztgeometry toor.Device toor.Device.device toor.Device.energy_resolution_function toor.Device.storedeviceInfo toor.GateLink toor.GateLink.GateToTor toor.GateLink.GateToTor.GateToTor toor.GateLink.GateToTor.MacParser toor.GateLink.RootToTor toor.GateLink.RootToTor.addanglestorootfile toor.GateLink.RootToTor.findcoincidencesRoot2Numpy toor.GateLink.RootToTor.readroot toor.GateLink.RootToTor.rootjoiner toor.GateLink.RootToTor.singlesstruct toor.GateLink.RootToTor.validation_plots toor.GateLink.ToRToGate toor.GateLink.ToRToGate.TorToGate toor.Geometry toor.Geometry.LinearPET toor.Geometry.LinearPET.linear_parametric_points toor.Geometry.Standard toor.Geometry.Standard.cylindrical toor.Geometry.Standard.planar toor.Geometry.Standard.polygonal toor.ImageReader toor.ImageReader.DICOM toor.ImageReader.DICOM.equipment toor.ImageReader.DICOM.filesreader toor.ImageReader.DICOM.frameofreference toor.ImageReader.DICOM.image toor.ImageReader.DICOM.patient toor.ImageReader.DICOM.series toor.ImageReader.DICOM.study toor.ImageReader.DICOM.submodule toor.ImageReader.DICOM.writeDicom toor.ImageReader.Interfile toor.ImageReader.Interfile.general_data toor.ImageReader.Interfile.interfile_writer toor.ImageReader.RawData toor.ImageReader.RawData.raw_data toor.Optimizer toor.Optimizer.CPU toor.Optimizer.GaussianFileGenarator toor.Optimizer.gpu_multiple_kernel toor.Optimizer.gpu_shared_memory toor.Optimizer.GPUManager toor.Optimizer.kernelManager toor.Optimizer.selectable_events toor.Quantification toor.Quantification.factor_calibration_phantom_uniform toor.TORFilesReader toor.TORFilesReader.Radioisotope toor.TORFilesReader.scanning_body toor.TORFilesReader.scanning_header toor.TORFilesReader.subject_type toor.TORFilesReader.technician toor.TORFilesReader.torfiles moduleID (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule attribute) (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) moduleNumber (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule property) MouseMoveCallback() (toor.Designer.Image_vtk_projector_article.SliceViewer method) multikernel_optimized_memory_reads() (toor.Optimizer.gpu_multiple_kernel.GPUSharedMemoryMultipleKernel method) multikernel_optimized_memory_reads_review() (toor.Optimizer.gpu_multiple_kernel.GPUSharedMemoryMultipleKernel method) multiplekernel() (toor.Optimizer.gpu_multiple_kernel.GPUSharedMemoryMultipleKernel method) multipleKernel() (toor.Optimizer.kernelManager.GPUSharedMemoryMultipleKernel method) multiply_by_pixel_size() (toor.Corrections.PET.DOI.crystal_planes.CrystalPlanes method) N NemaIQ2008() (toor.Designer.Image_vtk_projector_article.SliceViewer method) norm() (toor.Corrections.CT.Projector.pyramidalprojector.PyramidalProjector static method) norm_vector() (toor.Corrections.PET.DOI.crystal_planes.CrystalPlanes static method) (toor.Corrections.PET.DOI.intersection_test.PlanesCalc static method) normalization_LM() (toor.Corrections.CT.normalization.NormalizationCT method) NormalizationCT (class in toor.Corrections.CT.normalization) normalizationLM() (toor.Corrections.CT.normalization.AutomaticNormalization method) (toor.Corrections.CT.normalization.DualRotationNormalizationSystem method) (toor.Corrections.CT.normalization.NormalizationCT method) normVector() (toor.Corrections.PET.Projector.planeequations.ParallelepipedProjector static method) numberHead (toor.DetectionLayout.Modules.SPECTModuleGeneric.SPECTHeadGeneric property) numberHighEnergyLightDetectors (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule attribute) numberHighEnergyLightDetectorsX (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) numberHighEnergyLightDetectorsY (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) numberOfChannelsX (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) numberOfChannelsY (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) numberOfDetectorsSideA (toor.Corrections.CT.normalization.DualRotationNormalizationSystem property) numberOfDetectorsSideB (toor.Corrections.CT.normalization.DualRotationNormalizationSystem property) numberOfEvents (toor.TORFilesReader.scanning_body.ListModeBody property) numberOfEventsListMode (toor.Corrections.CT.normalization.DualRotationNormalizationSystem property) numberOfEventsPerFramePerSecond (toor.TORFilesReader.scanning_body.ListModeBody property) numberOfEventsPerSecond (toor.TORFilesReader.scanning_body.ListModeBody property) numberOfFrames (toor.TORFilesReader.scanning_header.AcquisitionInfo property) numberOfModules (toor.DetectionLayout.Modules.SPECTModuleGeneric.SPECTHeadGeneric property) (toor.Geometry.Standard.polygonal.RegularPolygonalGeometry property) numberOfModulesPerSide (toor.Geometry.Standard.polygonal.RegularPolygonalGeometry property) numberOfModulesPhi (toor.Geometry.Standard.polygonal.RegularPolygonalGeometry property) numberOfModulesZ (toor.Geometry.Standard.cylindrical.CylindricalGeometry property) (toor.Geometry.Standard.polygonal.RegularPolygonalGeometry property) numberOfMotors (toor.TORFilesReader.scanning_body.ListModeBody property) numberOfPixels (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule property) numberPixelPerChannel (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) numberVisibleLightSensorsX (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule attribute) (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) numberVisibleLightSensorsY (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule attribute) (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) O observations (toor.TORFilesReader.subject_type.AnimalType property) origin (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule property) OverlayPlane (class in toor.ImageReader.DICOM.image) override() (toor.ImageReader.DICOM.frameofreference.FrameOfReference method) (toor.ImageReader.DICOM.image.Device method) (toor.ImageReader.DICOM.image.GeneralImage method) (toor.ImageReader.DICOM.image.ImagePixel method) (toor.ImageReader.DICOM.image.ImagePlane method) (toor.ImageReader.DICOM.image.PETImage method) (toor.ImageReader.DICOM.patient.Patient method) (toor.ImageReader.DICOM.series.GeneralSeries method) (toor.ImageReader.DICOM.series.PETIsotope method) (toor.ImageReader.DICOM.series.PETSeries method) (toor.ImageReader.DICOM.study.GeneralStudy method) (toor.ImageReader.DICOM.study.PatientStudy method) overrideEnergyCut() (toor.Corrections.General.EnergyFiltering.EnergyFiltering method) P packageType (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) parallel_plane() (toor.Corrections.PET.DOI.intersection_test.PlanesCalc static method) ParallelepipedProjector (class in toor.Corrections.PET.Projector.planeequations) parent (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) partNumber (toor.GateLink.RootToTor.readroot.ReadRootFile property) Patient (class in toor.ImageReader.DICOM.patient) Patient_not (class in toor.ImageReader.DICOM.patient) patientID() (toor.ImageReader.DICOM.patient.Patient_not method) patientsName() (toor.ImageReader.DICOM.patient.Patient_not method) PatientStudy (class in toor.ImageReader.DICOM.study) pet_corrections() (toor.ImageReader.DICOM.writeDicom.WriteDicom method) PETImage (class in toor.ImageReader.DICOM.image) PETIsotope (class in toor.ImageReader.DICOM.series) PETModule (class in toor.DetectionLayout.Modules.PETModuleGeneric) PETMultiGatedAcquisition (class in toor.ImageReader.DICOM.series) PETSeries (class in toor.ImageReader.DICOM.series) phantomDescription (toor.TORFilesReader.subject_type.PhantomType property) phantomName (toor.TORFilesReader.subject_type.PhantomType property) phantomPurpose (toor.TORFilesReader.subject_type.PhantomType property) PhantomType (class in toor.TORFilesReader.subject_type) photonDetectionEfficiencyAtPeak (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) pixel2Position() (toor.Optimizer.selectable_events.ROIEvents method) pixelArea (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) pixelDepth (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) pixelHeight (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) pixelHeightTolerance (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) pixelPitch (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) pixelSize (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule property) pixelSpacingX (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule property) pixelSpacingY (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule property) pixelWidth (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) pixelWidthTolerance (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) PlanarGeometry (class in toor.Geometry.Standard.planar) plane_values() (toor.Corrections.PET.DOI.crystal_planes.CrystalPlanes static method) (toor.Corrections.PET.DOI.intersection_test.PlanesCalc static method) planeEquation() (toor.Corrections.PET.Projector.planeequations.ParallelepipedProjector static method) planeParameters() (toor.Corrections.PET.Projector.planeequations.ParallelepipedProjector method) planes_coincidence() (toor.Corrections.PET.DOI.intersection_test.PlanesCalc method) PlanesCalc (class in toor.Corrections.PET.DOI.intersection_test) planesImage() (toor.Corrections.PET.Projector.planeequations.ParallelepipedProjector method) PlotIntersectionData (class in toor.Corrections.PET.DOI.intersection_test) plots() (toor.Corrections.PET.Projector.planeequations.ParallelepipedProjector method) plt_segmented_image() (toor.Quantification.factor_calibration_phantom_uniform.FactorQuantificationFromUniformPhantom method) point_distance_to_plane() (toor.Corrections.PET.DOI.intersection_test.PlanesCalc static method) positronFractions (toor.TORFilesReader.Radioisotope.RadioisotopeInfo property) prepare_data() (toor.Designer.Image_vtk_projector_article.SliceViewer method) printCoincidenceStats() (toor.GateLink.RootToTor.findcoincidencesRoot2Numpy.GenerateCoincidencesAndAnhnilationsPositions method) printCurrentInfoCut() (toor.Corrections.General.EnergyFiltering.EnergyFiltering method) printMotorVariables() (toor.Corrections.CT.normalization.DualRotationNormalizationSystem method) printStatistics() (toor.TORFilesReader.scanning_body.ListModeBody method) probability_uniform_phantom() (toor.Corrections.CT.normalization.NormalizationCT method) probabilityOfDetection (toor.Corrections.General.detector_sensitivity.DetectorSensitivityResponse property) projected_sinogram() (toor.AnalyticalReconstruction.sinogram.Sinogram method) projectorHeadPointsMap (toor.DetectionLayout.Modules.SPECTModuleGeneric.SPECTHeadGeneric property) PyramidalProjector (class in toor.Corrections.CT.Projector.pyramidalprojector) Q quantification_factor_calculation() (toor.Quantification.factor_calibration_phantom_uniform.FactorQuantificationFromUniformPhantom method) R radioisotope (toor.TORFilesReader.scanning_header.AcquisitionInfo property) RadioisotopeInfo (class in toor.TORFilesReader.Radioisotope) radius (toor.Geometry.Standard.cylindrical.CylindricalGeometry property) (toor.Geometry.Standard.polygonal.RegularPolygonalGeometry property) RawDataSetter (class in toor.ImageReader.RawData.raw_data) read() (toor.TORFilesReader.torfiles.ToRFile method) read_files() (toor.ImageReader.RawData.raw_data.RawDataSetter method) readCoincidencesNumpyRecordsArray() (toor.GateLink.RootToTor.findcoincidencesRoot2Numpy.GenerateCoincidencesAndAnhnilationsPositions method) readDeviceFromDirectory() (toor.Device.storedeviceInfo.StoreDeviceInFo method) readDeviceProperties() (toor.Device.device.Device method) readDirectory() (toor.ImageReader.DICOM.filesreader.DicomReader method) readMotorFiles() (toor.GateLink.RootToTor.addanglestorootfile.AddMotorInfoToRoot method) readRoot() (toor.GateLink.RootToTor.readroot.ReadRootFile method) ReadRootFile (class in toor.GateLink.RootToTor.readroot) rebinningSSBR() (toor.AnalyticalReconstruction.sinogram.Sinogram method) reflectorThicknessX (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) reflectorThicknessY (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) regenerateStats() (toor.TORFilesReader.scanning_body.ListModeBody method) RegularPolygonalGeometry (class in toor.Geometry.Standard.polygonal) remove_events_outside_ROI() (toor.Optimizer.GPUManager.EM method) renderWindow() (toor.Designer.Image_vtk_projector_article.SliceViewer method) replace_field() (toor.GateLink.GateToTor.MacParser.GATEMacParser method) resetListmode() (toor.TORFilesReader.scanning_body.ListModeBody method) residual_activity_at_injection_time() (toor.Corrections.PET.DecayCorrection.decaycorrection.DecayCorrection method) residualActivity (toor.TORFilesReader.Radioisotope.RadioisotopeInfo property) resinThickness (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) ROIEvents (class in toor.Optimizer.selectable_events) RootJoiner (class in toor.GateLink.RootToTor.rootjoiner) rotateAndTranslate() (toor.DetectionLayout.Collimators.collimatorGeneric.CollimatorGeneric method) (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule method) rotateAndTranslateModule() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) route (toor.TORFilesReader.Radioisotope.RadioisotopeInfo property) run() (toor.Device.energy_resolution_function.EnergyResolutionFunction method) runID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) runID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) S SART() (toor.AnalyticalReconstruction.initializer.AnalyticalReconstruction method) save() (toor.GateLink.GateToTor.MacParser.GATEMacParser method) save_gpu_results() (toor.Optimizer.selectable_events.ROIEvents method) save_info() (toor.Quantification.factor_calibration_phantom_uniform.FactorQuantificationFromUniformPhantom method) save_screenshot() (toor.Designer.Image_vtk_projector_article.SliceViewer method) saveCoincidencesAsNumpyRecordsArray() (toor.GateLink.RootToTor.findcoincidencesRoot2Numpy.GenerateCoincidencesAndAnhnilationsPositions method) saveCoincidencesAsRootFile() (toor.GateLink.RootToTor.findcoincidencesRoot2Numpy.GenerateCoincidencesAndAnhnilationsPositions method) saveHeaderFile() (toor.ImageReader.Interfile.interfile_writer.InterfileWriter method) saveImageInPDF() (toor.Designer.Image_vtk_projector_article.SliceViewer method) saveMotorArraysIntoRoot() (toor.GateLink.RootToTor.addanglestorootfile.AddMotorInfoToRoot method) saveVarsHead() (toor.DetectionLayout.Modules.SPECTModuleGeneric.SPECTHeadGeneric method) saveVarsToFile() (toor.TORFilesReader.scanning_body.ListModeBody method) scanType (toor.TORFilesReader.scanning_header.AcquisitionInfo property) scattering_angle() (toor.Corrections.PET.EnergyCorrection.KleinNishina.KleinNishina method) segment_region_phantom() (toor.Quantification.factor_calibration_phantom_uniform.FactorQuantificationFromUniformPhantom method) series (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) seriesNumber (toor.ImageReader.DICOM.writeDicom.WriteDicom property) setAbsMinMin() (toor.Corrections.CT.Projector.pyramidalprojector.PyramidalProjector method) setAcquisitionInfo() (toor.TORFilesReader.torfiles.ToRFile method) setAlphaRotation() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal method) (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setAmbient() (toor.Designer.Image_vtk_projector_article.SliceViewer method) setAnglePhi() (toor.Geometry.Standard.polygonal.RegularPolygonalGeometry method) setAnimalWelfareResponsibleOrganization() (toor.TORFilesReader.technician.Technician method) setAnimalWelfareResponsiblePerson() (toor.TORFilesReader.technician.Technician method) setAnimalWelfareResponsiblePersonRole() (toor.TORFilesReader.technician.Technician method) setArraysToConvert() (toor.GateLink.RootToTor.readroot.ReadRootFile method) setBaseID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setBaseID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setBatchCodeMeaning() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method) setBatchCodeValue() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method) setBatchCodingSchemeDesignator() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method) setBatchCodingSchemeVersion() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method) setBatchLongCodeValue() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method) setBetaRotation() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal method) (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setBlockSPiMArea() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setBlockSPiMDepth() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setBlockSPiMHeight() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setBlockSPiMWidth() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setBorderSizeX() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setBorderSizeY() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setCalculateAllPositionsAllDetectors() (toor.Corrections.CT.normalization.DualRotationNormalizationSystem method) setCalibrations() (toor.TORFilesReader.torfiles.ToRFile method) setCenterSiPMModule() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setCentroid() (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal method) setChannelCentrePosition() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setChannelOriginalCentrePosition() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setColorMapLimits() (toor.Designer.Image_vtk_projector_article.SliceViewer method) setComptonCrystal (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setComptonCrystal() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setComptonDetector() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setComptonPhantom (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setComptonPhantom() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setCountsPerGlobalID() (toor.TORFilesReader.scanning_body.ListModeBody method) setCountsPerPosition() (toor.Corrections.CT.Projector.pyramidalprojector.PyramidalProjector method) setCristalSize() (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal method) setCrystalID() (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal method) setCurrentGammaInformation() (toor.Corrections.General.EnergyFiltering.EnergyFiltering method) setDataDescription() (toor.ImageReader.Interfile.general_data.GeneralData method) setDate() (toor.TORFilesReader.scanning_header.AcquisitionInfo method) setDecayEnergies() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method), [1] setDecayFactor() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method), [1] setDecayPercentage() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method), [1] setDecayTypes() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method), [1] setDensity() (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal method) setDetectorModule() (toor.Geometry.Standard.cylindrical.CylindricalGeometry method) (toor.Geometry.Standard.polygonal.RegularPolygonalGeometry method) setDetectorSensitivity() (toor.Corrections.General.detector_sensitivity.DetectorSensitivityResponse method) setDeviceName() (toor.Device.device.Device method) setDeviceType() (toor.Device.device.Device method) setDeviceUUID() (toor.Device.device.Device method) setDiagnosis() (toor.TORFilesReader.subject_type.AnimalType method) setDigitalPhantomCopy() (toor.TORFilesReader.subject_type.PhantomType method) setDoubleScannerFormat() (toor.GateLink.RootToTor.readroot.ReadRootFile method) setEffectiveAreaPerChannel() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setEffectiveHeight() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setEffectiveWidth() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setEndDate() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method), [1] setEnergy (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setEnergy() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setEnergyCutToListMode() (toor.Corrections.General.EnergyFiltering.EnergyFiltering method) setEnergyPeakKey() (toor.Corrections.CT.normalization.DualRotationNormalizationSystem method) setEnergyPeaks() (toor.Corrections.General.detector_sensitivity.DetectorSensitivityResponse method) setEnergyResolutionFunction() (toor.Device.device.Device method) setEnergyWindows() (toor.Corrections.General.detector_sensitivity.DetectorSensitivityResponse method) setEventID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setEventID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setExternalBorderSizeX() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setExternalBorderSizeY() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setFields() (toor.Corrections.General.detector_sensitivity.DetectorSensitivityResponse method) setfileBodyData() (toor.TORFilesReader.torfiles.ToRFile method) setFocalSpotDiameter() (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource method) setFocalSpotInitialPositionWKSystem() (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource method) setFocalSpotInitialPositionXYSystem() (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource method) setFrameOfReferenceUID() (toor.TORFilesReader.scanning_header.AcquisitionInfo method) setFrameStartIndexes() (toor.TORFilesReader.scanning_body.ListModeBody method) setGenerateMotorPositions() (toor.Corrections.CT.normalization.DualRotationNormalizationSystem method) setGeometricalFillFactor() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setGeometryObject() (toor.Device.device.Device method) setGeometryType() (toor.Device.device.Device method) setGlobalDetectorID() (toor.TORFilesReader.scanning_body.ListModeBody method) setGlobalPosX (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setGlobalPosX() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setGlobalPosY (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setGlobalPosY() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setGlobalPosZ (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setGlobalPosZ() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setHalfLifes() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method), [1] setHealthy() (toor.TORFilesReader.subject_type.AnimalType method) setHeight() (toor.Geometry.Standard.cylindrical.CylindricalGeometry method) setHighEnergyLightDetectorBlock() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) setId() (toor.TORFilesReader.scanning_header.AcquisitionInfo method) setImagingModality() (toor.ImageReader.Interfile.general_data.GeneralData method) setIndexesOfFrames() (toor.TORFilesReader.scanning_header.AcquisitionInfo method) setInitialGeometry() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) setInjectionDateTime() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method) setInstanceUID() (toor.TORFilesReader.scanning_header.AcquisitionInfo method) setLevel1ID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setLevel1ID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setLevel2ID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setLevel2ID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setLevel3ID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setLevel3ID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setLevel4ID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setLevel4ID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setLevel5ID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setLevel5ID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setListmode() (toor.TORFilesReader.scanning_body.ListModeBody method) setListmodeFields() (toor.TORFilesReader.scanning_body.ListModeBody method) setListModeHistogramHybridMode() (toor.TORFilesReader.scanning_body.ListModeBody method) setMainEmissions() (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource method) setMaxValueForVolume() (toor.Designer.Image_vtk_projector_article.SliceViewer method) setMaxValues() (toor.TORFilesReader.scanning_body.ListModeBody method) setMeanValues() (toor.TORFilesReader.scanning_body.ListModeBody method) setMedianValues() (toor.TORFilesReader.scanning_body.ListModeBody method) setMinDiff() (toor.TORFilesReader.scanning_body.ListModeBody method) setMinValues() (toor.TORFilesReader.scanning_body.ListModeBody method) setModel() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setModelHighEnergyLightDetectors() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) setModelVisibleLightSensors() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) setModuleID() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) setName() (toor.TORFilesReader.technician.Technician method) setNumberHead() (toor.DetectionLayout.Modules.SPECTModuleGeneric.SPECTHeadGeneric method) setNumberOfChannelsX() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setNumberOfChannelsY() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setNumberOfEvents() (toor.TORFilesReader.scanning_body.ListModeBody method) setNumberOfEventsPerFramePerSecond() (toor.TORFilesReader.scanning_body.ListModeBody method) setNumberOfEventsPerSecond() (toor.TORFilesReader.scanning_body.ListModeBody method) setNumberOfFrames() (toor.TORFilesReader.scanning_header.AcquisitionInfo method) setNumberOfModulesPerSide() (toor.Geometry.Standard.polygonal.RegularPolygonalGeometry method) setNumberOfModulesPhi() (toor.Geometry.Standard.polygonal.RegularPolygonalGeometry method) setNumberOfModulesZ() (toor.Geometry.Standard.cylindrical.CylindricalGeometry method) (toor.Geometry.Standard.polygonal.RegularPolygonalGeometry method) setNumberOfMotors() (toor.TORFilesReader.scanning_body.ListModeBody method) setNumberPixelPerChannel() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setObservations() (toor.TORFilesReader.subject_type.AnimalType method) setOrganization() (toor.TORFilesReader.technician.Technician method) setPackageType() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) SetParametricCoordinates (class in toor.Geometry.LinearPET.linear_parametric_points) setPartNumber() (toor.GateLink.RootToTor.readroot.ReadRootFile method) setPhantomDescription() (toor.TORFilesReader.subject_type.PhantomType method) setPhantomName() (toor.TORFilesReader.subject_type.PhantomType method) setPhantomPurpose() (toor.TORFilesReader.subject_type.PhantomType method) setPhotonDetectionEfficiencyAtPeak() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setPixelArea() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setPixelDepth() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setPixelHeight() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setPixelHeightTolerance() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setPixelPitch() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setPixelSpacingX() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setPixelSpacingY() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setPixelWidth() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setPixelWidthTolerance() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setPositronFractions() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method), [1] setProjectorHeadPointsMap() (toor.DetectionLayout.Modules.SPECTModuleGeneric.SPECTHeadGeneric method) setRadioisotope() (toor.TORFilesReader.scanning_header.AcquisitionInfo method) setRadius() (toor.Geometry.Standard.cylindrical.CylindricalGeometry method) (toor.Geometry.Standard.polygonal.RegularPolygonalGeometry method) setReflectorThicknessX() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) setReflectorThicknessY() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) setResidualActivity() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method), [1] setResinThickness() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setRole() (toor.TORFilesReader.technician.Technician method) setRoute() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method), [1] setRunID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setRunID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setScanType() (toor.TORFilesReader.scanning_header.AcquisitionInfo method) setSeries() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setShieldingDensity() (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource method) setShieldingHeight() (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource method) setShieldingMaterial() (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource method) setShieldingRadius() (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource method) setShieldingShape() (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource method) setShieldingThickness() (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource method) setShiftInvariantParameters() (toor.Optimizer.GaussianFileGenarator.GaussianParameters method) setShiftVariantParameters() (toor.Optimizer.GaussianFileGenarator.GaussianParameters method) setSigmaRotation() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal method) (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setSourceActivity() (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource method) setSourceID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setSourceID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setSourceName() (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource method) setSourcePosX (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setSourcePosX() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setSourcePosY (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setSourcePosY() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setSourcePosZ (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setSourcePosZ() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setSpecular() (toor.Designer.Image_vtk_projector_article.SliceViewer method) setStartDate() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method), [1] setStdValues() (toor.TORFilesReader.scanning_body.ListModeBody method) setStudyInstanceUID() (toor.TORFilesReader.scanning_header.AcquisitionInfo method) setSubject() (toor.TORFilesReader.scanning_header.AcquisitionInfo method) setSystemInfo() (toor.TORFilesReader.torfiles.ToRFile method) setSystemSensitivity() (toor.CalibrationWrapper.calibration_wrapper.CalibrationWrapper method) setTecnhician() (toor.TORFilesReader.scanning_header.AcquisitionInfo method) setTime (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) setTime() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) setTotalDose() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method), [1] setTracers() (toor.TORFilesReader.Radioisotope.RadioisotopeInfo method), [1] setUniqueValues() (toor.TORFilesReader.scanning_body.ListModeBody method) setUniqueValuesCount() (toor.TORFilesReader.scanning_body.ListModeBody method) setVendor() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setVertices() (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal method) setVerticesCrystalCoordinateSystem() (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal method) setVisibleEnergyLightDetectorBlock() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) setVolumeRotation() (toor.Designer.Image_vtk_projector_article.SliceViewer method) setWindowRefractiveIndex() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setWindowType() (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setXTranslation() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal method) (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setYTranslation() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal method) (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) setZoomVolume() (toor.Designer.Image_vtk_projector_article.SliceViewer method) setZTranslation() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal method) (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM method) shieldingDensity (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource property) shieldingHeight (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource property) shieldingMaterial (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource property) shieldingRadius (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource property) shieldingShape (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource property) shieldingThickness (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource property) sigma_y_square (toor.Optimizer.GaussianFileGenarator.GaussianParameters property) sigma_z_square (toor.Optimizer.GaussianFileGenarator.GaussianParameters property) sigmaRotation (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) singles (toor.GateLink.RootToTor.readroot.ReadRootFile property) singlesScanner1 (toor.GateLink.RootToTor.readroot.ReadRootFile property) singlesScanner2 (toor.GateLink.RootToTor.readroot.ReadRootFile property) Sinogram (class in toor.AnalyticalReconstruction.sinogram) SliceViewer (class in toor.Designer.Image_vtk_projector_article) SOPCommon (class in toor.ImageReader.DICOM.image) sourceActivity (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource property) sourceID (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) sourceID() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) sourceName (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource property) sourcePosX (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) sourcePosX() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) sourcePosY (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) sourcePosY() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) sourcePosZ (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) sourcePosZ() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) Specimen (class in toor.ImageReader.DICOM.image) SPECTHeadGeneric (class in toor.DetectionLayout.Modules.SPECTModuleGeneric) startDateTime (toor.TORFilesReader.Radioisotope.RadioisotopeInfo property) startRender() (toor.Designer.deviceDesigner.DeviceDesignerStandalone method) std (toor.TORFilesReader.scanning_body.ListModeBody property) StoreDeviceInFo (class in toor.Device.storedeviceInfo) studyInstanceUID (toor.TORFilesReader.scanning_header.AcquisitionInfo property) SubAttribute (class in toor.ImageReader.DICOM.submodule) subject (toor.TORFilesReader.scanning_header.AcquisitionInfo property) Synchronization (class in toor.ImageReader.DICOM.equipment) systemInfo (toor.TORFilesReader.torfiles.ToRFile property) systemSensitivity (toor.CalibrationWrapper.calibration_wrapper.CalibrationWrapper property) T tag() (toor.ImageReader.DICOM.submodule.MainAttribute method) (toor.ImageReader.DICOM.submodule.SubAttribute method) Technician (class in toor.TORFilesReader.technician) tecnichian (toor.TORFilesReader.scanning_header.AcquisitionInfo property) three_plane_intersection() (toor.Corrections.PET.DOI.intersection_test.PlanesCalc static method) tiledProbabilityOfDetection (toor.Corrections.CT.normalization.DualRotationNormalizationSystem property) time (toor.GateLink.RootToTor.singlesstruct.ExtractSingles property) time() (toor.GateLink.RootToTor.singlesstruct.ExtractSingles method) time_id_series (toor.ImageReader.DICOM.writeDicom.WriteDicom property) toor module toor.AnalyticalReconstruction module toor.AnalyticalReconstruction.initializer module toor.AnalyticalReconstruction.sinogram module toor.CalibrationWrapper module toor.CalibrationWrapper.calibration_wrapper module toor.Corrections module toor.Corrections.CT module toor.Corrections.CT.normalization module toor.Corrections.CT.Projector module toor.Corrections.CT.Projector.pyramidalprojector module toor.Corrections.General module toor.Corrections.General.detector_sensitivity module toor.Corrections.General.EnergyFiltering module toor.Corrections.General.generalprojector module toor.Corrections.PET module toor.Corrections.PET.Attenuation module toor.Corrections.PET.DecayCorrection module toor.Corrections.PET.DecayCorrection.decaycorrection module toor.Corrections.PET.DOI module toor.Corrections.PET.DOI.crystal_planes module toor.Corrections.PET.DOI.doi module toor.Corrections.PET.DOI.intersection_test module toor.Corrections.PET.DOI.solid_angle module toor.Corrections.PET.EnergyCorrection module toor.Corrections.PET.EnergyCorrection.KleinNishina module toor.Corrections.PET.Projector module toor.Corrections.PET.Projector.planeequations module toor.Designer module toor.Designer.deviceDesigner module toor.Designer.geometricdesigner module toor.Designer.Image_vtk_projector_article module toor.DetectionLayout module toor.DetectionLayout.Collimators module toor.DetectionLayout.Collimators.collimatorGeneric module toor.DetectionLayout.Modules module toor.DetectionLayout.Modules.PETModuleGeneric module toor.DetectionLayout.Modules.SPECTModuleGeneric module toor.DetectionLayout.Photodetectors module toor.DetectionLayout.Photodetectors.Crystals module toor.DetectionLayout.Photodetectors.Crystals.genericCrystal module toor.DetectionLayout.Photodetectors.Crystals.LYSO module toor.DetectionLayout.Photodetectors.SiPM module toor.DetectionLayout.Photodetectors.SiPM.generic module toor.DetectionLayout.Photodetectors.SiPM.Hamamatsu module toor.DetectionLayout.Photodetectors.SiPM.Kettek module toor.DetectionLayout.RadiationProducer module toor.DetectionLayout.RadiationProducer.GenericSource module toor.DetectionLayout.Semicondutors module toor.DetectionLayout.Semicondutors.cztgeometry module toor.Device module toor.Device.device module toor.Device.energy_resolution_function module toor.Device.storedeviceInfo module toor.GateLink module toor.GateLink.GateToTor module toor.GateLink.GateToTor.GateToTor module toor.GateLink.GateToTor.MacParser module toor.GateLink.RootToTor module toor.GateLink.RootToTor.addanglestorootfile module toor.GateLink.RootToTor.findcoincidencesRoot2Numpy module toor.GateLink.RootToTor.readroot module toor.GateLink.RootToTor.rootjoiner module toor.GateLink.RootToTor.singlesstruct module toor.GateLink.RootToTor.validation_plots module toor.GateLink.ToRToGate module toor.GateLink.ToRToGate.TorToGate module toor.Geometry module toor.Geometry.LinearPET module toor.Geometry.LinearPET.linear_parametric_points module toor.Geometry.Standard module toor.Geometry.Standard.cylindrical module toor.Geometry.Standard.planar module toor.Geometry.Standard.polygonal module toor.ImageReader module toor.ImageReader.DICOM module toor.ImageReader.DICOM.equipment module toor.ImageReader.DICOM.filesreader module toor.ImageReader.DICOM.frameofreference module toor.ImageReader.DICOM.image module toor.ImageReader.DICOM.patient module toor.ImageReader.DICOM.series module toor.ImageReader.DICOM.study module toor.ImageReader.DICOM.submodule module toor.ImageReader.DICOM.writeDicom module toor.ImageReader.Interfile module toor.ImageReader.Interfile.general_data module toor.ImageReader.Interfile.interfile_writer module toor.ImageReader.RawData module toor.ImageReader.RawData.raw_data module toor.Optimizer module toor.Optimizer.CPU module toor.Optimizer.GaussianFileGenarator module toor.Optimizer.gpu_multiple_kernel module toor.Optimizer.gpu_shared_memory module toor.Optimizer.GPUManager module toor.Optimizer.kernelManager module toor.Optimizer.selectable_events module toor.Quantification module toor.Quantification.factor_calibration_phantom_uniform module toor.TORFilesReader module toor.TORFilesReader.Radioisotope module toor.TORFilesReader.scanning_body module toor.TORFilesReader.scanning_header module toor.TORFilesReader.subject_type module toor.TORFilesReader.technician module toor.TORFilesReader.torfiles module ToRFile (class in toor.TORFilesReader.torfiles) totalDose (toor.TORFilesReader.Radioisotope.RadioisotopeInfo property) totalNumberHighEnergyLightDetectors (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) totalNumberOfChannels (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) totalNumberOfGammas (toor.Corrections.General.EnergyFiltering.EnergyFiltering property) tracers (toor.TORFilesReader.Radioisotope.RadioisotopeInfo property) transformIntoPositivePoints() (toor.Corrections.CT.Projector.pyramidalprojector.PyramidalProjector method) (toor.Corrections.General.generalprojector.GeneralProjector method) two_plane_intersection() (toor.Corrections.PET.DOI.intersection_test.PlanesCalc static method) type() (toor.ImageReader.DICOM.submodule.MainAttribute method) (toor.ImageReader.DICOM.submodule.SubAttribute method) typeOfPatientID() (toor.ImageReader.DICOM.patient.Patient_not method) U uniqueValues (toor.TORFilesReader.scanning_body.ListModeBody property) uniqueValuesCount (toor.TORFilesReader.scanning_body.ListModeBody property) update_image_position() (toor.ImageReader.DICOM.image.ImagePlane method) updatecztThickness() (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule method) updateDetectorSizeX() (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule method) updateDetectorSizeY() (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule method) updateDsFile() (toor.ImageReader.DICOM.patient.Patient_not method) updateLimits() (toor.AnalyticalReconstruction.sinogram.Sinogram method) updateModuleNumber() (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule method) updateNumberHighEnergyLightDetectors() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) updateNumberOfPixels() (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule method) updateNumberVisibleLightSensorsX() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) updateNumberVisibleLightSensorsY() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) updateOrigin() (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule method) updatePixelSize() (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule method) updatepixelSpacingX() (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule method) updatepixelSpacingY() (toor.DetectionLayout.Semicondutors.cztgeometry.CZTModule method) updateSeriesNumber() (toor.ImageReader.DICOM.writeDicom.WriteDicom method) updatetimeIdSeries() (toor.ImageReader.DICOM.writeDicom.WriteDicom method) updateVariables() (toor.ImageReader.DICOM.patient.Patient_not method) updateVisibleLightSensorObject() (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule method) updateVolume() (toor.ImageReader.DICOM.writeDicom.WriteDicom method) URNCodeValue() (toor.ImageReader.DICOM.submodule.SubAttribute method) V value() (toor.ImageReader.DICOM.submodule.MainAttribute method) (toor.ImageReader.DICOM.submodule.SubAttribute method) vectorVertex() (toor.DetectionLayout.Collimators.collimatorGeneric.CollimatorGeneric static method) vendor (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) version (toor.TORFilesReader.torfiles.ToRFile property) vertex1 (toor.DetectionLayout.Collimators.collimatorGeneric.CollimatorGeneric property) vertex2 (toor.DetectionLayout.Collimators.collimatorGeneric.CollimatorGeneric property) vertex3 (toor.DetectionLayout.Collimators.collimatorGeneric.CollimatorGeneric property) vertex4 (toor.DetectionLayout.Collimators.collimatorGeneric.CollimatorGeneric property) vertices (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) visibleLightSensorObject (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule attribute) (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) VoiLUT (class in toor.ImageReader.DICOM.image) volume (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) volumes() (toor.ImageReader.DICOM.filesreader.DicomReader method) vtkTimerCallback (class in toor.Designer.Image_vtk_projector_article) W wheelForwardCallback() (toor.Designer.Image_vtk_projector_article.SliceViewer method) windowRefractiveIndex (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) windowType (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) write() (toor.ImageReader.RawData.raw_data.RawDataSetter method) (toor.TORFilesReader.torfiles.ToRFile method) write_dicom_file() (toor.ImageReader.DICOM.writeDicom.WriteDicom method) write_probability_phantom() (toor.Corrections.CT.normalization.NormalizationCT method) WriteDicom (class in toor.ImageReader.DICOM.writeDicom) writeSourceInformation() (toor.DetectionLayout.RadiationProducer.GenericSource.GenericRadiativeSource method) X xTranslation (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) Y yTranslation (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property) Z zTranslation (toor.DetectionLayout.Modules.PETModuleGeneric.PETModule property) (toor.DetectionLayout.Photodetectors.Crystals.genericCrystal.GenericCrystal property) (toor.DetectionLayout.Photodetectors.SiPM.generic.GenericSiPM property)